назад
TBLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= GLMU ECOLI
(456 letters)
Database: 3g
1077 sequences; 12,619,654 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE006217|AE006217 Pasteurella multocida subsp. multocida st... 639 0.0
embl|AE004342|AE004342 Vibrio cholerae O1 biovar eltor str. N169... 633 0.0
embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 ... 495 e-140
embl|AE004297|AE004297 Vibrio cholerae O1 biovar eltor str. N169... 58 7e-09
embl|AE004175|AE004175 Vibrio cholerae O1 biovar eltor str. N169... 50 2e-06
embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 ... 43 2e-04
embl|AE006146|AE006146 Pasteurella multocida subsp. multocida st... 41 8e-04
embl|AE006124|AE006124 Pasteurella multocida subsp. multocida st... 39 0.004
embl|AE004379|AE004379 Vibrio cholerae O1 biovar eltor str. N169... 37 0.009
embl|AE006160|AE006160 Pasteurella multocida subsp. multocida st... 37 0.016
embl|AE006102|AE006102 Pasteurella multocida subsp. multocida st... 37 0.016
embl|AE004496|AE004496 Pseudomonas aeruginosa PAO1, section 57 o... 35 0.061
embl|AE004365|AE004365 Vibrio cholerae O1 biovar eltor str. N169... 34 0.10
embl|AE004250|AE004250 Vibrio cholerae O1 biovar eltor str. N169... 33 0.18
embl|AE004783|AE004783 Pseudomonas aeruginosa PAO1, section 344 ... 33 0.23
embl|AE004411|AE004411 Vibrio cholerae O1 biovar eltor str. N169... 32 0.30
embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 ... 32 0.51
embl|AE004521|AE004521 Pseudomonas aeruginosa PAO1, section 82 o... 31 0.87
embl|AE004929|AE004929 Pseudomonas aeruginosa PAO1, section 490 ... 29 2.5
embl|AE004638|AE004638 Pseudomonas aeruginosa PAO1, section 199 ... 29 2.5
embl|AE006236|AE006236 Pasteurella multocida subsp. multocida st... 29 3.3
embl|AE004853|AE004853 Pseudomonas aeruginosa PAO1, section 414 ... 28 4.3
embl|AE004764|AE004764 Pseudomonas aeruginosa PAO1, section 325 ... 28 4.3
embl|AE004659|AE004659 Pseudomonas aeruginosa PAO1, section 220 ... 28 4.3
embl|AE004602|AE004602 Pseudomonas aeruginosa PAO1, section 163 ... 28 4.3
embl|AE004561|AE004561 Pseudomonas aeruginosa PAO1, section 122 ... 28 4.3
embl|AE004231|AE004231 Vibrio cholerae O1 biovar eltor str. N169... 28 4.3
embl|AE006089|AE006089 Pasteurella multocida subsp. multocida st... 28 5.7
embl|AE004857|AE004857 Pseudomonas aeruginosa PAO1, section 418 ... 28 5.7
embl|AE004480|AE004480 Pseudomonas aeruginosa PAO1, section 41 o... 28 5.7
embl|AE004966|AE004966 Pseudomonas aeruginosa PAO1, section 527 ... 28 7.4
embl|AE004606|AE004606 Pseudomonas aeruginosa PAO1, section 167 ... 28 7.4
embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of... 28 7.4
embl|AE004432|AE004432 Vibrio cholerae O1 biovar eltor str. N169... 28 7.4
embl|AE004709|AE004709 Pseudomonas aeruginosa PAO1, section 270 ... 27 9.7
embl|AE004509|AE004509 Pseudomonas aeruginosa PAO1, section 70 o... 27 9.7
>embl|AE006217|AE006217 Pasteurella multocida subsp. multocida str.
Pm70 section 184 of 204 of the complete genome.
Length = 12384
Score = 639 bits (1649), Expect = 0.0
Identities = 314/455 (69%), Positives = 370/455 (81%)
Frame = +3
Query: 1 MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGD 60
M A+S+VILAAGKGTRMYSDLPKVLH +AGK MV+HVID + A ++HLVYGHGG+
Sbjct: 5421 MKEKALSIVILAAGKGTRMYSDLPKVLHKIAGKPMVKHVIDTVKSIHAKNIHLVYGHGGE 5600
Query: 61 LLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDA 120
+++ L+D+ +NWVLQAEQLGTGHAMQQAAPFFADDE+ILMLYGD PLI+ ETLQ L A
Sbjct: 5601 VMQTRLQDEPVNWVLQAEQLGTGHAMQQAAPFFADDENILMLYGDGPLITAETLQTLIAA 5780
Query: 121 KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADM 180
KP+ GI LLTV LDDPTGYGRI RENG V IVE KDA EQ +IQEINTG+L+A+G +
Sbjct: 5781 KPEHGIALLTVVLDDPTGYGRIVRENGNVVAIVEQKDANAEQLKIQEINTGLLVADGKSL 5960
Query: 181 KRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQ 240
K+WL++LTNNNAQGEYYITD+IALA Q+G ++VAV EVEGVNNR QL+RLER YQ
Sbjct: 5961 KKWLSQLTNNNAQGEYYITDVIALANQDGCQVVAVQASDFMEVEGVNNRQQLARLERYYQ 6140
Query: 241 SEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKN 300
+QA+ LLLAGV L DP RFDLRG L+HG+DVEID NVIIEG V+LGHRVKIG GCV+KN
Sbjct: 6141 RKQADNLLLAGVALADPERFDLRGELSHGKDVEIDVNVIIEGKVSLGHRVKIGAGCVLKN 6320
Query: 301 SVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK 360
IGDD EI PY+V+E+A + A IGPF+RLRPG L + H+GNFVE+KKA +G GSK
Sbjct: 6321 CQIGDDVEIKPYSVLEEAIVGQAAQIGPFSRLRPGTALADNTHIGNFVEIKKAHIGTGSK 6500
Query: 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGAT 420
HL+Y+GDAE+G NIGAG ITCNYDGANKFKTIIGD+VFVGSD QLVAPVT+ GAT
Sbjct: 6501 VNHLSYVGDAEVGMQCNIGAGVITCNYDGANKFKTIIGDNVFVGSDVQLVAPVTIETGAT 6680
Query: 421 IAAGTTVTRNVGENALAISRVPQTQKEGWRRPVKK 455
I AGTTVT++V + L ISRVPQ +GW+RP K+
Sbjct: 6681 IGAGTTVTKDVACDELVISRVPQRHIQGWQRPTKQ 6785
>embl|AE004342|AE004342 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 250 of 251 of the complete
chromosome.
Length = 12928
Score = 633 bits (1632), Expect = 0.0
Identities = 306/450 (68%), Positives = 368/450 (81%)
Frame = -1
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL 66
S VILAAGKGTRM+S++PKVLHTLAGK MV+HVID N LGA ++HLVYGHGGD ++QAL
Sbjct: 7243 STVILAAGKGTRMHSNMPKVLHTLAGKPMVKHVIDTCNNLGAQNIHLVYGHGGDQMQQAL 7064
Query: 67 KDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGI 126
++N+NWVLQA+QLGTGHA+ QA+P F DDE IL+LYGDVPLIS +T++ L +A+P GI
Sbjct: 7063 ANENVNWVLQAQQLGTGHAVDQASPHFQDDEKILVLYGDVPLISEDTIESLLEAQPTDGI 6884
Query: 127 GLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAK 186
LLTV L+DPTGYGRI R+ G V IVE KDA++EQ+ I+E+NTG+L+A G D+KRWLA
Sbjct: 6883 ALLTVVLEDPTGYGRIVRKRGPVVAIVEQKDASEEQKLIKEVNTGVLVATGRDLKRWLAG 6704
Query: 187 LTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEK 246
L NNNAQGEYY+TD+IA A+ EGR + AVHP EVEGVN+R+QL+RLER +Q+ QA+K
Sbjct: 6703 LNNNNAQGEYYLTDVIAAAHDEGRAVEAVHPSHSIEVEGVNDRIQLARLERAFQARQAKK 6524
Query: 247 LLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD 306
LL GVMLRDPARFDLRGTL G DVEID NVIIEGNV++G+ V IG G ++K+ I D+
Sbjct: 6523 LLEQGVMLRDPARFDLRGTLQCGSDVEIDVNVIIEGNVSIGNNVVIGAGSILKDCEIDDN 6344
Query: 307 CEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTY 366
I PY+V+E A + CT+GPF RLRPGAEL + AHVGNFVEMK ARLG+GSKA HLTY
Sbjct: 6343 TVIRPYSVIEGATVGENCTVGPFTRLRPGAELRDDAHVGNFVEMKNARLGEGSKANHLTY 6164
Query: 367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTT 426
LGDAEIG VN+GAG ITCNYDGANK KT+IGDDVFVGSD QLVAPVT+G GATI AGTT
Sbjct: 6163 LGDAEIGKGVNVGAGVITCNYDGANKHKTVIGDDVFVGSDCQLVAPVTIGNGATIGAGTT 5984
Query: 427 VTRNVGENALAISRVPQTQKEGWRRPVKKK 456
+T+NV E L I+R P+ + GW+RP KKK
Sbjct: 5983 LTKNVAEGELVITRAPERKIAGWQRPAKKK 5894
>embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 of
529 of the complete genome.
Length = 16662
Score = 495 bits (1274), Expect = e-140
Identities = 255/453 (56%), Positives = 325/453 (71%), Gaps = 1/453 (0%)
Frame = -3
Query: 5 AMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQ 64
++ +VILAAG+GTRM S LPKVLH +AGK M+ HVID A +L +H+V GHG DL+++
Sbjct: 9430 SLEIVILAAGQGTRMRSALPKVLHPIAGKPMLGHVIDCARQLQPERIHVVIGHGADLVRE 9251
Query: 65 ALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQG 124
+ D+LN+VLQAEQLGTGHA+ QA PF + D+ +L+LYGDVPLI ++TLQRL
Sbjct: 9250 RMAADDLNFVLQAEQLGTGHAVAQALPFLSADQ-VLILYGDVPLIQLDTLQRLLAQVTPD 9074
Query: 125 GIGLLTVKLDDPTGYGRITREN-GKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRW 183
+ LLTV + DPTGYGRI R++ G V IVEHKDAT QRQI EINTGIL G + W
Sbjct: 9073 QLSLLTVDMLDPTGYGRIVRDDQGAVQAIVEHKDATPAQRQIGEINTGILAVPGKRLADW 8894
Query: 184 LAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ 243
L +L+N+NAQGEYY+TD+IA+A +G + + P EV+GVN+R+Q ++LER YQ +
Sbjct: 8893 LGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRMQQAQLERHYQRLR 8714
Query: 244 AEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVI 303
AE+L+ GV L DP R D+RG ++ GRDV ID NV++EG V + V+IG CVI++SV+
Sbjct: 8713 AEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVRIGPNCVIRDSVL 8534
Query: 304 GDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGH 363
I + +E A L GPFARLRPG+ L AHVGNFVE+K ARLG+GSKAGH
Sbjct: 8533 RRGAVIKANSHLEGAELGEGSDAGPFARLRPGSVLGARAHVGNFVELKNARLGEGSKAGH 8354
Query: 364 LTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAA 423
L+YLGDAE+G N NIGAGTITCNYDGANKF+T +GDDVF+GS+ LVAP+ +G GAT AA
Sbjct: 8353 LSYLGDAELGANCNIGAGTITCNYDGANKFRTELGDDVFIGSNNSLVAPLKIGDGATTAA 8174
Query: 424 GTTVTRNVGENALAISRVPQTQKEGWRRPVKKK 456
G+T+T V LA R Q E W+RP K K
Sbjct: 8173 GSTITHEVPAKNLAFGRARQKNLENWKRPEKIK 8075
>embl|AE004297|AE004297 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 205 of 251 of the complete
chromosome.
Length = 10901
Score = 57.8 bits (138), Expect = 7e-09
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Frame = -1
Query: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVI-KNSVIGDDCEI-SPYTVVEDANLAAACTI 326
G +V I N +IE V LG V IG GC I K + +GD+ ++ + T+ + + C I
Sbjct: 788 GHNVSIGANAVIESGVQLGDNVVIGAGCFIGKQARLGDNTKLWANVTIYHKVEIGSDCLI 609
Query: 327 GPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGH---LTYLGDAEIGDNVNIGAGTI 383
G +G G ++ G + LG IGD V IGA T
Sbjct: 608 Q------------SGTVIG------ADGFGYANERGEWIKIPQLGSVRIGDRVEIGACT- 486
Query: 384 TCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 427
D T+I D+V + + Q+ V +G G+ +A GT +
Sbjct: 485 --TIDRGALDDTVIEDNVIIDNQLQIAHNVHIGYGSALAGGTVI 360
>embl|AE004175|AE004175 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 83 of 251 of the complete
chromosome.
Length = 21409
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +2
Query: 351 KKARLGKGSKAGHLTYL---GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT 407
K+ ++G G GH T + A+IG N N+ T+ + G +GD V++G
Sbjct: 12404 KETQVGPGLYLGHATGVIVNSTAKIGANCNLSPFTVIGSNQGQ---AATVGDCVYIGPHV 12574
Query: 408 QLVAPVTVGKGATIAAGTTVTRNVGENALAI 438
+V +T+G G+ I AG+ V R+V N++ +
Sbjct: 12575 SIVEDITIGDGSIIGAGSVVIRDVPPNSVVV 12667
>embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 of
529 of the complete genome.
Length = 12469
Score = 42.7 bits (99), Expect = 2e-04
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Frame = -1
Query: 271 DVEIDTNV------IIEGNVTLGHRVKIGTGCVI-KNSVIGDDCEISP-YTVVEDANLAA 322
D E+D + +IE +G V IG CVI SVIG+ ++P T+ D
Sbjct: 9121 DAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV---- 8954
Query: 323 ACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382
TIG ++ GA + G F K G K + +G IGD+V IGA T
Sbjct: 8953 --TIGARVSIQSGAVI--GGEGFGFANEK----GVWQK---IAQIGGVTIGDDVEIGANT 8807
Query: 383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAA--GTTVTRNVGENAL 436
D T+IG+ V + + + V +G +AA G + + +G + +
Sbjct: 8806 ---TIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCM 8648
Score = 30.8 bits (68), Expect = 0.87
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Frame = -3
Query: 309 ISPYTVVE-DANLAAACTIGPFARLRPGAELLEGAHVGNFVEMK-KARLGK--------- 357
I P +++ A LAA +GP++ + E+ EG +G V +K ++GK
Sbjct: 7901 IDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSS 7722
Query: 358 -GSKAGHLTYLGDAE---IGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPV 413
G L Y G+ IGD+ I G ++ +T IGD + + +
Sbjct: 7721 VGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDS 7542
Query: 414 TVGKGATIAAGTTVTRNVGENALAI 438
+G + T + +V + AI
Sbjct: 7541 VIGNHCILVNNTALAGHVHVDDWAI 7467
>embl|AE006146|AE006146 Pasteurella multocida subsp. multocida str.
Pm70 section 113 of 204 of the complete genome.
Length = 10734
Score = 40.8 bits (94), Expect = 8e-04
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Frame = -1
Query: 345 GNFVEMKKARLGKGSKAG-HLTYL--GDAEIGDNV----NIGAGTITCNYDGANK----- 392
G F+E+ GK A H T L G +IGD+V N+ T+ D +
Sbjct: 9822 GQFIEV-----GKNFFANYHCTILDTGGVKIGDDVLFAPNVSLYTVGHPIDPELRKAEWE 9658
Query: 393 --FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQK 446
+IG++V++G + ++ VT+G I AG+ VT+++ N +A+ + Q+
Sbjct: 9657 QALPIVIGNNVWIGGNVVILGGVTIGDNTVIGAGSVVTKDIPANCVAVGNPCKVQR 9490
Score = 32.3 bits (72), Expect = 0.30
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = -1
Query: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV------IGDDCEI 309
G +V I NV+I G VT+G IG G V+ + +G+ C++
Sbjct: 9636 GNNVWIGGNVVILGGVTIGDNTVIGAGSVVTKDIPANCVAVGNPCKV 9496
>embl|AE006124|AE006124 Pasteurella multocida subsp. multocida str.
Pm70 section 91 of 204 of the complete genome.
Length = 10585
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = -1
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL 66
+V+I A TR+ K L +AGK M+ HV + A + GA V + H
Sbjct: 4996 TVIIPARYASTRLPG---KPLAEIAGKPMIAHVFEKAMQSGAKRVIVATDHEQVATVARG 4826
Query: 67 KDDNLNWVLQAEQLGTGHAMQQAAPF-FADDEDILMLYGDVPLISVETLQRLRD--AKPQ 123
+ + Q GT + A+DE I+ + GD PLI ++++ + AK Q
Sbjct: 4825 FGAEVCMTSETHQSGTERLAEVVEKLGIAEDEIIVNIQGDEPLIPPAIVRQVAENLAKYQ 4646
Query: 124 GGIGLLTVKLDDP 136
+ L V + DP
Sbjct: 4645 VKMASLAVNITDP 4607
>embl|AE004379|AE004379 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 36 of 93 of the complete
chromosome.
Length = 10020
Score = 37.4 bits (85), Expect = 0.009
Identities = 15/40 (37%), Positives = 30/40 (75%)
Frame = +2
Query: 392 KFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNV 431
K T+IG+DV++G ++ ++ +T+G GA +A+ + VT++V
Sbjct: 5960 KGDTVIGNDVWLGYESTIMPGITIGDGAIVASKSVVTQDV 6079
>embl|AE006160|AE006160 Pasteurella multocida subsp. multocida str.
Pm70 section 127 of 204 of the complete genome.
Length = 11080
Score = 36.6 bits (83), Expect = 0.016
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 390 ANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENAL 436
++K T+IG++V++G + ++ V +G GA I + VT+NV A+
Sbjct: 1676 SSKGDTVIGNEVWIGYNATIMPGVKIGDGAIIGTNSVVTKNVPPYAI 1816
>embl|AE006102|AE006102 Pasteurella multocida subsp. multocida str.
Pm70 section 69 of 204 of the complete genome.
Length = 12600
Score = 36.6 bits (83), Expect = 0.016
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Frame = -2
Query: 331 RLRPGAELLEGAHVG-NFVEMKK-----ARLGKGSKAGHLTYLGD-AEIGDNVNIGAGT- 382
R+ P A + +GA++ N V M AR+ +G+ +G A+IG NV++ G
Sbjct: 629 RVVPPAAVRKGAYIAKNTVLMPSYVNIGARVDEGTMVDTWATVGSCAQIGKNVHLSGGVG 450
Query: 383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 427
I + TII D+ F+G+ +++V V V +G+ I+ G +
Sbjct: 449 IGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 315
>embl|AE004496|AE004496 Pseudomonas aeruginosa PAO1, section 57 of 529
of the complete genome.
Length = 10520
Score = 34.7 bits (78), Expect = 0.061
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Frame = +3
Query: 3 NNAMSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGG 59
+ M +ILAAG+G RM PK L AG +++ + A + G + + G
Sbjct: 1098 SRGMKAMILAAGRGERMRPTTLHTPKPLIEAAGVPLIERQLLALRQAGVDDWVINHAWLG 1277
Query: 60 DLLKQALKDDN-----LNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDV 106
+ ++ L D + + + + E L TG + +A P ++ L+L GDV
Sbjct: 1278 EQIEAYLGDGSRLGGRIAYSPEGEPLETGGGIFRALPLLG-EQPFLLLNGDV 1430
>embl|AE004365|AE004365 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 22 of 93 of the complete
chromosome.
Length = 11288
Score = 33.9 bits (76), Expect = 0.10
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 392 KFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQK 446
K T IGD ++G ++ V +G+GA +AA + VT++V ++ Q K
Sbjct: 5068 KGNTEIGDGAWLGMRAMIMPGVKIGEGAIVAANSVVTKDVAPYSIVAGSPAQLVK 5232
>embl|AE004250|AE004250 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 158 of 251 of the complete
chromosome.
Length = 10146
Score = 33.1 bits (74), Expect = 0.18
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV 315
I +V LG VKIG GC IK ++I D EI+ T++
Sbjct: 9028 ISESVILGD-VKIGAGCTIKRAIIDKDVEIAAGTII 8924
>embl|AE004783|AE004783 Pseudomonas aeruginosa PAO1, section 344 of
529 of the complete genome.
Length = 12207
Score = 32.7 bits (73), Expect = 0.23
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 5 AMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVID 41
A VI AAG G+RM +D PK LAG+ +++ +D
Sbjct: 5383 AFWTVIPAAGVGSRMRADRPKQYLDLAGRTVIERTLD 5273
>embl|AE004411|AE004411 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 68 of 93 of the complete
chromosome.
Length = 10574
Score = 32.3 bits (72), Expect = 0.30
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Frame = -1
Query: 372 IGDNVNIGAGTI------TCNYDGANKFKTI-----IGDDVFVGSDTQLVAPVTVGKGAT 420
IGD+V IG T + +Y ++TI I DDV++G + + VT+G +
Sbjct: 7727 IGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGARSV 7548
Query: 421 IAAGTTVTRNVGENAL 436
+AA + V ++V + L
Sbjct: 7547 VAANSVVNQDVPPDTL 7500
>embl|AE004749|AE004749 Pseudomonas aeruginosa PAO1, section 310 of 529
of the complete genome.
Length = 16841
Score = 31.6 bits (70), Expect = 0.51
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 53 LVYGH-GGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPF 92
L+ GH G DLL+Q ++ L W QA QL T HA++Q F
Sbjct: 14541 LLAGHFGDDLLRQHVQ--RLAWQHQAVQLATAHAVEQRRAF 14657
>embl|AE004521|AE004521 Pseudomonas aeruginosa PAO1, section 82 of 529
of the complete genome.
Length = 10895
Score = 30.8 bits (68), Expect = 0.87
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Frame = -2
Query: 16 GTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVL 75
G+ ++ P + G A+ ++ AA LG A L GH D L+QAL+ +L
Sbjct: 9757 GSEIHLAAPGLHRAALGLAVQPALLRAARRLGRAPRLLHLGHAADQLRQALQGILAVLLL 9578
Query: 76 QAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR--------------LRDAK 121
LG H AA D L++ L+ VE QR L D
Sbjct: 9577 GPVLLGLDHHHAVAA-------DALVVQCQQTLL-VERRQRRGLDVEAQVHRAGDLVDVL 9422
Query: 122 PQGGIGLLTVKLD 134
P G +G ++LD
Sbjct: 9421 PAGALGANGIQLD 9383
>embl|AE004929|AE004929 Pseudomonas aeruginosa PAO1, section 490 of
529 of the complete genome.
Length = 10638
Score = 29.3 bits (64), Expect = 2.5
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 10/217 (4%)
Frame = +1
Query: 9 VILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQA 65
+ILA G GTR++ + K L + K M+ + + G + ++ Q
Sbjct: 2353 IILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQ 2532
Query: 66 LKDDNLNW------VLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRD 119
L D NW +Q G A F +D L+L GD + + L
Sbjct: 2533 LLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVL-GDNLYYGHDFHELLGS 2709
Query: 120 A-KPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGA 178
A + Q G + + DP YG + + G +E K + TG+ +
Sbjct: 2710 ASQRQTGASVFAYHVLDPERYGVVEFDQGGKAISLEEKPLEPKSNYAV---TGLYFYDQQ 2880
Query: 179 DMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAV 215
+ +A+ + +GE ITD+ + G+ V +
Sbjct: 2881 VVD--IARDLKPSPRGELEITDVNRAYLERGQLSVEI 2985
>embl|AE004638|AE004638 Pseudomonas aeruginosa PAO1, section 199 of
529 of the complete genome.
Length = 11886
Score = 29.3 bits (64), Expect = 2.5
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Frame = +3
Query: 316 EDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGD-AEIGD 374
E A A A + +L GAE+ +G+ + G G+ G +GD I
Sbjct: 2598 ERALEATALLVSSRGKLLSGAEIHPRCKIGSRFILDH---GHGTVIGETAVIGDDCYILG 2768
Query: 375 NVNIGAGTITCNYDGANKFKTI-----------------IGDDVFVGSDTQLVAPVTVGK 417
V +GA I+ N G + TI IGDDVFVG + + VG
Sbjct: 2769 GVVLGATGISANPAG-KRHPTIGSRVQIGAFTRVLGDIAIGDDVFVGPHCVIKDDIPVGS 2945
Query: 418 GATIAAGTTVTR 429
T+ + V R
Sbjct: 2946 VVTLRSELQVIR 2981
>embl|AE006236|AE006236 Pasteurella multocida subsp. multocida str.
Pm70 section 203 of 204 of the complete genome.
Length = 11371
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 274 IDTNVIIEGNVTLGHRVKIGTGCVIKNSVI 303
I+ NVII+ + H V IGTG + VI
Sbjct: 1344 IEDNVIIDNLCQIAHNVHIGTGTAVAGGVI 1433
>embl|AE004853|AE004853 Pseudomonas aeruginosa PAO1, section 414 of
529 of the complete genome.
Length = 11064
Score = 28.5 bits (62), Expect = 4.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = -3
Query: 361 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDT---QLVAPVT--- 414
+GH+ + D ++GD + +G GT GA I+G G+ T Q++AP
Sbjct: 910 SGHVFEVADQQVGDGLQVG-GTTVAMAAGAVLALGIVGGGTVAGAGTGAVQVLAPEEELD 734
Query: 415 -VGKGATIAAGTTVTRNVGE 433
V G + GT G+
Sbjct: 733 GVVAGGDVGFGTAQLVQAGQ 674
>embl|AE004764|AE004764 Pseudomonas aeruginosa PAO1, section 325 of
529 of the complete genome.
Length = 10425
Score = 28.5 bits (62), Expect = 4.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 39 VIDAANELGAAHVHLVYGHGGDLLK-QALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDE 97
++ A ++L AA +HL GGDL++ QA + D VL A LG Q P D+
Sbjct: 2914 LVGAVHQLLAAGIHLHQAGGGDLVEHQAERVD--QEVLGARHLGRDVGEDQVVPTVQGDQ 3087
Query: 98 DI 99
+
Sbjct: 3088 PV 3093
>embl|AE004659|AE004659 Pseudomonas aeruginosa PAO1, section 220 of
529 of the complete genome.
Length = 12411
Score = 28.5 bits (62), Expect = 4.3
Identities = 23/87 (26%), Positives = 32/87 (36%)
Frame = +2
Query: 318 ANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVN 377
A+ + +GP L+ G E G HVG E ++A H LG E G
Sbjct: 4217 ASAGSGLRVGPAILLQLGIERRAGEHVGEVAERRQAH-----PEDHFQGLGLVETG---- 4369
Query: 378 IGAGTITCNYDGANKFKTIIGDDVFVG 404
GA F+ ++GD G
Sbjct: 4370 -----------GAEGFELLVGDRTAAG 4417
>embl|AE004602|AE004602 Pseudomonas aeruginosa PAO1, section 163 of
529 of the complete genome.
Length = 13243
Score = 28.5 bits (62), Expect = 4.3
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Frame = -3
Query: 261 DLRGTLTHGRDV--------EIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPY 312
DLR L G DV +DT V TL V +G G K++ G+ +
Sbjct: 9962 DLRAGLGQGVDVVDVQGVQGRVDTVV----EATLLEEVTVGLGGCGKSAGYGN----AGT 9807
Query: 313 TVVEDANLAAACTIGPFARLRPGAELLEGAHV---GNFVEMKKARLGKGSKAGHLTYLGD 369
V D +LA C + P AEL+EG +V G+ ++ +L +G +
Sbjct: 9806 GQVAD-HLAEGCVLAPHMLYIMDAELIEGNYVLYQGDLSTIELEKLKRGQEQLRWILAWP 9630
Query: 370 AEIGDN 375
EI DN
Sbjct: 9629 LEISDN 9612
>embl|AE004561|AE004561 Pseudomonas aeruginosa PAO1, section 122 of
529 of the complete genome.
Length = 10757
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 24 PKVLHTLAGKAMVQHVIDAANELGAAHVHLVY---GHGGDLL 62
P+ L L G + HV+ + L HVH+++ GHGG +L
Sbjct: 3288 PEHLRLLLGTRLHVHVLHVFHALHGLHVHVLHVVTGHGGFVL 3163
>embl|AE004231|AE004231 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 139 of 251 of the complete
chromosome.
Length = 11185
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3
Query: 7 SVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVID 41
S VILA G+ +RM K L L G+ +VQHVID
Sbjct: 2439 SWVILAGGQASRMGGQ-DKGLIQLNGQPLVQHVID 2540
>embl|AE006089|AE006089 Pasteurella multocida subsp. multocida str. Pm70
section 56 of 204 of the complete genome.
Length = 12519
Score = 28.1 bits (61), Expect = 5.7
Identities = 58/243 (23%), Positives = 96/243 (39%), Gaps = 33/243 (13%)
Frame = +1
Query: 8 VVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAA---------NELG-----AAHVHL 53
V+ILA G+G+R+Y K + +ID A N +G AAH L
Sbjct: 11200 VLILAGGRGSRLYELTDKRAKPALYFGGNRRIIDFALSNCLNSGLNRIGVVTQYAAHSLL 11379
Query: 54 VYGHGGDLLKQALKDDNLNWVLQAEQL-------GTGHAMQQAAPFFAD---DEDILMLY 103
+ G A + + ++ + +Q+ GT A+ Q D + IL+L
Sbjct: 11380 RHLQNGWSFLPAERGEFIDMLPARQQIDDSTWYRGTADAVYQNMAIIRDHYCPKYILILA 11559
Query: 104 GDVPLISVETLQRLRDAKPQGG---IGLLTVKLDDPTGYG-RITRENGKVTGIVEHKDAT 159
GD + + Q L D G +G + V+ + T +G EN KV VE
Sbjct: 11560 GD-HIYKQDYSQMLLDHIHSGAKCTVGCIEVEREKATEFGVMAVNENLKVKSFVE--KPK 11730
Query: 160 DEQRQIQEINT-----GILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVA 214
D + + NT GI + + + L + ++ + DI+ A +EG ++
Sbjct: 11731 DPPAMVGKPNTSLASMGIYVFDADYLYDVLEREVSSPYTSHDFGKDILPKALEEG--VLY 11904
Query: 215 VHP 217
HP
Sbjct: 11905 AHP 11913
>embl|AE004857|AE004857 Pseudomonas aeruginosa PAO1, section 418 of
529 of the complete genome.
Length = 10948
Score = 28.1 bits (61), Expect = 5.7
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Frame = +3
Query: 20 YSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHG-GDLLKQALKDDN-------- 70
YS L L L + + +DAA E G VHLV G G G + DD+
Sbjct: 9279 YSGLDDALRGLGDQLLEVDRLDAAREAGVVVVHLVGGLGTGHTHLLGVDDDDVVAGVNVR 9458
Query: 71 --LNWVLQAEQLGT-GHAMQQAAPFFADDEDILM 101
L VL + G G Q DDE + +
Sbjct: 9459 SVLRLVLATQAAGNFGRQTTQGLAGSVDDEPVAL 9560
>embl|AE004480|AE004480 Pseudomonas aeruginosa PAO1, section 41 of 529
of the complete genome.
Length = 10910
Score = 28.1 bits (61), Expect = 5.7
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Frame = +3
Query: 50 HVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQ---AAPFFADDEDILMLYGDV 106
HV GG L A+ V + LG A+ Q P A ED L+ V
Sbjct: 5784 HVEQAVDPGGGLFGDAVDALEHLRVFLVQDLGQVTAVVQHHVGVPRLAILEDGLLDAPFV 5963
Query: 107 PLISVETLQRLRDAKPQGGIGLLTVKLDD----PTGYGRITRENG--KVTGIVEHKDATD 160
+ + RDA G G L + +D P +G R+ G + G+ H DAT+
Sbjct: 5964 LFLGLALPGEHRDAGGGDGGGGLVLGGEDVAARPADFGA-QRDQGLDQHAGLDGHVDATE 6140
Query: 161 EQRQIQEINTGILIA 175
+ R Q + GIL A
Sbjct: 6141 DLRAFQRLLAGILAA 6185
>embl|AE004966|AE004966 Pseudomonas aeruginosa PAO1, section 527 of
529 of the complete genome.
Length = 10821
Score = 27.7 bits (60), Expect = 7.4
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Frame = +1
Query: 266 LTHGRDVEIDTNVIIEGNVTLGHRV-----------KIGTGCVIKNSVIGDDCEI 309
+T G I I+ G +G RV ++G GCV++++ + D C++
Sbjct: 5293 VTIGEHSSIAHRSIVHGPCEVGDRVFIGFNSVLFNCRVGDGCVVRHNAVVDGCDL 5457
>embl|AE004606|AE004606 Pseudomonas aeruginosa PAO1, section 167 of
529 of the complete genome.
Length = 10851
Score = 27.7 bits (60), Expect = 7.4
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Frame = -3
Query: 47 GAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLG---------TGHAMQQAAPFFADDE 97
GA + GH DL+ QA+ D + +A +G G Q D+E
Sbjct: 4360 GALDGQVALGH--DLVDQAILDGFVT-AHKAVTIGIAGNDVQGLAGVVRQDLVQTLLDEE 4190
Query: 98 DILMLYGDVPLISVETLQRLRDAKPQ--------GGIGLLTVKLDDPTGYGRITRENGKV 149
D L + D+ +++ET QRL D P+ GG T + T R+ G+
Sbjct: 4189 DFLGMDLDIRGLALETAQRLVDHHPRMRQAVALAGG----TARKQQGTHAARLADTGGRD 4022
Query: 150 TGIVEHKDATD 160
G+ E D
Sbjct: 4021 VGLDELHGVVD 3989
>embl|AE004446|AE004446 Pseudomonas aeruginosa PAO1, section 7 of 529
of the complete genome.
Length = 19762
Score = 27.7 bits (60), Expect = 7.4
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -3
Query: 280 IEGNVTLGHRVKIGTGCVIKNSV-IGDDCEISPYTVVEDANLAAACTIGPFARLRPGAEL 338
I VT+GH+V + GC I N V +G + V+ED + A ++ P PG L
Sbjct: 3188 IGDEVTVGHKVLL-HGCSIGNRVLVGMGSIVMDGAVIEDEVILGAGSLVP-----PGKVL 3027
Query: 339 LEG-AHVGNFVEMKKARLGKGSKAGHLTY 366
G +VG+ KKAR + G Y
Sbjct: 3026 ESGFLYVGS--PAKKARPLSDKERGFFAY 2946
>embl|AE004432|AE004432 Vibrio cholerae O1 biovar eltor str. N16961
chromosome II, section 89 of 93 of the complete
chromosome.
Length = 11493
Score = 27.7 bits (60), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 290 VKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPG 335
V IGT CV+ ++ G +S +V+ +AAA I P A + G
Sbjct: 6896 VIIGTVCVVSYTLFGGFLAVSWTDLVQGLLMAAALMIVPIAAMNGG 6759
>embl|AE004709|AE004709 Pseudomonas aeruginosa PAO1, section 270 of
529 of the complete genome.
Length = 9970
Score = 27.3 bits (59), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 25 KVLHTLAGKAMVQHVIDAANELGAAHVH 52
+V H AG+A+++ IDA G H+H
Sbjct: 9825 RVAHQQAGQAVLEAAIDAEGVQGVGHLH 9742
>embl|AE004509|AE004509 Pseudomonas aeruginosa PAO1, section 70 of 529
of the complete genome.
Length = 11717
Score = 27.3 bits (59), Expect = 9.7
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 356 GKGSKAGHLTYLGDAEIGDNVNIGAG-----TITCNYDGANKFKTIIGDDVFVGSDTQLV 410
G AGHL G +G++V +GAG + +Y G + + D +D ++
Sbjct: 8590 GFAEAAGHLASAGLVAVGEHVQVGAGGEELRPLAGHYQGVDIVVAVEVLDQLAQADQRVA 8769
Query: 411 APVTVGKGATIAAG 424
P G G + G
Sbjct: 8770 VP---GVGRRVVDG 8802
Database: 3g
Posted date: Sep 28, 2006 7:47 PM
Number of letters in database: 12,619,654
Number of sequences in database: 1077
Lambda K H
0.317 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,074,489
Number of Sequences: 1077
Number of extensions: 86239
Number of successful extensions: 599
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 223
length of query: 456
length of database: 4,206,551
effective HSP length: 97
effective length of query: 359
effective length of database: 4,102,082
effective search space: 1472647438
effective search space used: 1472647438
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)